2026-02-04 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBe PDBe 2024-07-22 2026-02-04 2026-02-04 2026-02-04 Medical Research Council (MRC, United Kingdom) MC_UU_00015/2 and MC_UU_00028/1 United Kingdom Yaikhomba M Hirst J Croll TI Spikes TE Agip ANA Supercomplex, multi-subunit membrane protein complex, electron transport chain, native purification, respiration, ELECTRON TRANSPORT Yaikhomba M Hirst J Croll TI Spikes TE To Be Published 0353 9g83 FULLOVERLAP EMDB EMD-51125 associated EM volume

Respiratory supercomplex CI1-CIII2-CIV2-(cbb3)1 from alphaproteobacterium

Respiratory supercomplex CI1-CIII2-CIV2 -(cbb3)1 from alphaproteobacterium Respiratory supercomplex CI1-CIII2-CIV2 -(cbb3)1 from alphaproteobacterium 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 Paracoccus denitrificans PD1222 Alphaproteobacterial respiratory complex I (NADH-ubiquinone oxidoreductase) 1 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 27 Paracoccus denitrificans PD1222 Alphaproteobacterial respiratory complex IV (Cytochrome c oxidase, aa3-type) 1 22 23 24 25 Paracoccus denitrificans PD1222 Transmembrane-anchored cytochrome c (c552) 1 26 Paracoccus denitrificans PD1222 Alphaproteobacterial respiratory complex III (ubiquinone-cytochrome c oxidoreductase, cytochrome bc1) 1 19 20 21 Paracoccus denitrificans PD1222 Alphaproteobacterial respiratory complex cbb3-oxidase 1 30 31 32 Paracoccus denitrificans PD1222 Interfacial transmembrane helices between CIII and cbb3-oxidase 1 28 29 Paracoccus denitrificans PD1222 NADH-quinone oxidoreductase subunit A Paracoccus denitrificans PD1222 0.013686093 1 LEVO (FME)EYLLQEYLPILVFLGMASALAIVLILAAAVIAVRNPDPEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLE VAFLFPWAVSFASLSDVAFWGMMVFLAVLTVGFAYEWKKGALEWA A1B498 NADH-quinone oxidoreductase subunit B Paracoccus denitrificans PD1222 0.019525543 1 LEVO MMTGLNTAGADRDLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERFGTAPRASP RQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI LQLQRRIRRTGTLVR A1B497 NADH-quinone oxidoreductase subunit C Paracoccus denitrificans PD1222 0.023920102 1 LEVO MSEALSDEALLELAEHIALRRENDVISTQVAFGELTVNATLSGVIGLIEFLRNDPNCRFSTLIDITAVDNPARPARFDVV YHLLSMYQNQRIRVKVQVREDELVPSLIGVFPGANWYEREVFDLFGILFSGHSDLRRILTDYGFRGHPLRKDFPTTGYVE VRWSDIEKRVVYEPVNLVQEYRQFDFLSPWEGAKYVLPGDEKAPEAKK A1B496 NADH-quinone oxidoreductase subunit D Paracoccus denitrificans PD1222 0.046811483999999993 1 LEVO MDGDIRKNSYDDGSMDALTGEQSIRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLH(2MR)GTEKLMESRTY LQNLPYLDRLDYVAPMNQEHAWCLAIERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMDVGALTPPLWGFEAREE LMIFYERACGARLHAAYFRPGGVHQDLPPDLLDDIEEWCERFPKLVDDLDTLLTENRIFKQRLVDIGIVTEADALDWGYT GVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGRNGDCYDRYLCRMAEMRESCKIMQQAVQKLRAEPAGDVLARGKLTPPR RAEMKRDMESLIHHFKLYTEGFKVPAGEVYAAVEAPKGEFGVYLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHMLADV PAIIATLDIVFGEVDR A1B495 NADH dehydrogenase subunit E Paracoccus denitrificans PD1222 0.026145865 1 LEVO MLRRLSPIQPDSFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIEYCADLLGMPYIRALEVATFYF MFQLQPVGSVAHIQICGTTTCMICGAEDLIRVCKEKIAPEPHALSADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTVE KLAALIDRFAAGEVPVPGPQNGRFSAEALGGPTALADLKGGEAHNASVARALRLGDSIKRIDGTEVPITTPWLATQNGV A1B494 NADH-quinone oxidoreductase subunit F Paracoccus denitrificans PD1222 0.047281141 1 LEVO MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGFPTGMKWSFMPKESDGRPSYL VINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHAAYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDF DLYLHHGAGAYICGEETALLESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGV KLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCENAIMDYDGMRELRSSFGTAC MIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMMRVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAW PIQGLIRNFREEIEDRIKAKRTGRMGAMAAE A1B491 NADH-quinone oxidoreductase Paracoccus denitrificans PD1222 0.07328939799999999 1 LEVO MADLRKIKIDDTIIEVDPNMTLIQACEMAGIEVPRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQVKDLRPGPEGA PSEIRTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDFSRYREPKRATEDLNLGPLVETHMTRCIS CTRCVRFTTEVAGITQMGQTGRGEDSEITSYLNQTLESNMQGNIIDLCPVGALVSKPYAFTARPWELTKTESIDVMDALG SSIRIDTKGREVMRILPRNHDGVNEEWISDKTRFVWDGLRRQRLDRPYIRENGRLRPASWPEALEAAARAMKGKKIAGLI GDLVPAEAAFSLKQLVEGLGGKVECRVDGARLPAGNRSAYVGTARIEDIDDAEMIQLIGTNPRDEAPVLNARIRKAWSKG AKVGLVGEPVDLTYDYAHVGTDRAALESLSSREISDETKARPSIVIVGQGAIREADGEAVLAHAMKLAENSNSGLLILHT AAGRVGAMDVGAVTEGGLLAAIDGAEVVYNLGADEVDIDQGPFVIYQGSHGDRGAHRADIILPGACYTEESGLFVNTEGR PQLAMRANFAPGEGKENWAILRALSAELGATQPWDSLAGLRRKLVEAVPHLAQIDQVPQNEWQPLGRFDLGQASFRYAIR DFYLTNPIARSSPLMGELSAMAAARKAPAPLAAE A1B489 7.1.1.- NADH-quinone oxidoreductase subunit H Paracoccus denitrificans PD1222 0.038861152 1 LEVO MAEFWASPYGFALSMLLQGLAVIAFVMGSLIFMVYGDRKIWAAVQMRRGPNVVGPWGLLQTFADALKYIVKEIVIPAGAD KFVYFLAPFLSMMLALFAFVVIPFDEGWVMANINVGILFIFAASSLEVYGVIMGGWASNSKYPFLASLRSAAQMISYEVS LGLIIIGIIISTGSMNLTAIVEAQRGDYGLLNWYWLPHLPMVVLFFVSALAECNRPPFDLVEAESELVAGFMTEYSSTPY LLFMAGEYIAMYLMCALLSLLFFGGWLSPVPFIADGWWWMVIKMWFWFYMFAMVKAIVPRYRYDQLMRIGWKVFLPLSLG WVVLVAILARYEILGGFWARFAVGG A1B487 NADH-quinone oxidoreductase subunit I Paracoccus denitrificans PD1222 0.018925561 1 LEVO MAFDFARATKYFLMWDFIKGFGLGMRYFVSPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAIT IDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELFYDKQKLLANGERWEAEIARNLQLDA PYR A1B486 NADH-quinone oxidoreductase subunit J Paracoccus denitrificans PD1222 0.021732019999999998 1 LEVO (FME)TFAFYLFAISACVAGFMVVIGRNPVHSVLWLILAFLSAAGLFVLQGAEFVAMLLVVVYVGAVAVLFLFVVMMLDV DFAELKGELARYLPLALVIGVVLLAQLGIAFSGWTPSDQAESLRAAPVDAAVENTLGLGLVLYDRYVLMFQLAGLVLLVA MIGAIVLTMRHRKDVKRQNVLEQMWRDPAKTMELKDVKPGQGL A1B483 7.1.1.- NADH-quinone oxidoreductase subunit K Paracoccus denitrificans PD1222 0.010863054 1 LEVO MIGLTHYLVVGAILFVTGIFGIFVNRKNVIVILMSIELMLLAVNINFVAFSTHLGDLAGQVFTMFVLTVAAAEAAIGLAI LVVFFRNRGTIAVEDVNVMKG A1B482 7.1.1.- NADH dehydrogenase subunit L Paracoccus denitrificans PD1222 0.07783936699999999 1 LEVO (FME)EKFVLFAPLIASLIAGLGWRAIGEKAAQYLTTGVLFLSCLISWYLFLSFDGVPRHIPVLDWVVTGDFHAEWAIRL DRLTAIMLIVVTTVSALVHMYSLGYMAHDDNWTHDEHYKARFFAYLSFFTFAMLMLVTADNLLQMFFGWEGVGVASYLLI GFYYKKASANAAAMKAFIVNRVGDFGFLLGIFGIYWLTGSVQFDEIFRQVPQLAQTEMHFLWRDWNAANLLGFLLFVGAM GKSAQLLLHTWLPDAMEGPTPVSALIHAATMVTAGVFLVCRMSPLYEFAPDAKNFIVIIGATTAFFAATVGLVQNDIKRV IAYSTCSQLGYMFVAAGVGVYSAAMFHLLTHAFFKAMLFLGAGSVIHAMHHEQDMRNYGGLRKKIPLTFWAMMIGTFAIT GVGIPLTHLGFAGFLSKDAIIESAYAGSGYAFWLLVIAACFTSFYSWRLIFLTFYGKPRGDHHAHDHAHESPPVMTIPLG VLAIGAVFAGMVWYGPFFGDHHKVTEYFHIAGAHHEAAEGEEAEHATAEAPVEHAVADTATAEGEAAAEAEHAEIAAPVG GAIYMHPDNHIMDEAHHAPAWVKVSPFVAMVLGLITAWTFYIANPSLPRRLAAQQPALYRFLLNKWYFDEIYEFIFVRPA KWLGRVLWKGGDGAVIDGTINGVAMGLIPRLTRAAVRVQSGYLFHYAFAMVLGIVGLLIWVMMRGAH A1B481 1.6.5.3 NADH dehydrogenase subunit M Paracoccus denitrificans PD1222 0.056547914 1 LEVO (FME)TNLLSIITFLPIVAAIIMALFLRGQDEAAARNAKWLALLTTTATFVISLFVLFRFDPANTGFQFVEDHAWIMGLR YKMGVDGISVLFVLLTTFMMPLTILSTWQVQDKVKEYMIAFLVLEGLMIGVFTALDLVLFYLFFEAGLIPMFLIIGIWGG KDRIYASFKFFLYTFLGSVLMLVAMIAMYRMAGTTDIPTLLTFDFPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMW PVHTWLPDAHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVALAQSDMKKVIAYS SVAHMGYVTMGVFAANQIGVDGAIFQMLSHGFISGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYAAVFMFFTMANVGL PGTSGFVGEFLTLMGVFRVDTWVALVATSGVILSAAYALWLYRRVTLGQLIKESLKSITDMTPRERWVFIPLIAMTLILG VYPRLVTDVTGPAVAALVQDYNQSQPAAPVATAQASH A1B480 1.6.5.3 NADH-quinone oxidoreductase subunit N Paracoccus denitrificans PD1222 0.05256482 1 LEVO MTSLDFSTILPEVVLAGYALAALMAGAYLGKDRLARTLLWVTVAAFLVVAAMVGLGNHVDGAAFHGMFIDDGFSRFAKVV TLVAAAGVLAMSADYMQRRNMLRFEFPIIVALAVLGMMFMVSAGDLLTLYMGLELQSLALYVVAAMRRDSVRSSEAGLKY FVLGSLSSGLLLYGASLVYGFAGTTGFEGIISTIEAGHLSLGVLFGLVFMLVGLSFKVSAVPFHMWTPDVYEGSPTPVTA FFATAPKVAAMALIARLVFDAFGHVIGDWSQIVAALAVMSMFLGSIAGIGQTNIKRLMAYSSIAHMGFALVGLAAGTAIG VQNMLLYMTIYAVMNIGTFAFILSMERDGVPVTDLAALNRFAWTDPVKALAMLVLMFSLAGVPPTLGFFAKFGVLTAAVD AGMGWLAVLGVIASVIGAFYYLRIVYYMYFGGESEGMTSRMGAVQYLALMVPALAMLVGAISMFGVDSAAGRAAETLVGP VAAIEQPAEAAQAEPVQGE A1B479 NAD-dependent epimerase/dehydratase Paracoccus denitrificans PD1222 0.035386565999999994 1 LEVO MSAAKLVTIYGGSGFLGRQIARTMAAQGWRIRVAVRRPNEAGVVRTYGAPGQVEPVPCNVRDDLSVTACMADADAVINCV GIMVREGKNTFDAIHEEAAGRIARIAAETGVKRFVHVSAIGADPDSASRYAASKGRGEAAVLAHRPDAMILRPSVIFGPD DHFYNRIASMTRLGPILFVPGANTLMQPVYVEDVARAAAMGAEGTAQPGIYELGGPDMLTMREVAQQVLVAIDRRRAIVG LPHWLARVTGSALDLVQAATGGLLTNRILTRDQARLLRLPNRVSGEVKTFADLDIEPTAAPAVIADYLWRFRSSGQYEAI TASAKNLRNS A1AZB0 ETC complex I subunit conserved region Paracoccus denitrificans PD1222 0.012048399 1 LEVO MRVRIYKPARNAMQSGTARTRNWVLDFPPADPRAIDPLMGWTSSDDTQSQVRLRFETRKQAEDYAREHGLDYEVIEPHTR AANIRPRGYGENFASDRRAPWTH A1B1M0 Zinc finger CHCC-type domain-containing protein Paracoccus denitrificans PD1222 0.007069930999999999 1 LEVO MTIPAPEIQTVTSWKVACDGDEARGLGHPRVWLAIPRDTGWVECGYCDKRFVIDREHAHDDH A1B357 Protein-L-isoaspartate O-methyltransferase Paracoccus denitrificans PD1222 0.023528946999999998 1 LEVO MTDFAQRRTMMVDTQVRPNEVTSYPVIEAMLNVPREQFVPESRRDVAYVGNNIDLAPGRVLLEPRTLGKMMDILNLQNGD LVLDVGCGYGYSAAVMARIAEAVVAVEEDAAMAAEAEGRLAAQDVFNVAVVQGALAEGCPGQAPYDAILIEGAVEQVPEA LTEQLREGGRIVALFREGNLGIVRLGHKLDGRVNWRFAFNAVAPLLPGFARPRGFVL A1B5L6 Cytochrome b Paracoccus denitrificans PD1222 0.050154726999999996 2 LEVO MAGIPHDHYEPKTGFERWLHRRLPIVSLVYDTLMIPTPKNLNWWWIWGIVLAFCLVLQIATGIVLVMHYTPHVDLAFASV EHIMRDVNGGYMLRYLHANGASLFFLAVYIHIFRGLYYGSYKAPREVTWIVGMLIYLMMMGTAFMGYVLPWGQMSFWGAT VITGLFGAIPGVGEAIQTWLLGGPAVDNPTLNRFFSLHYLLPFVIAALVVVHIWAFHTTGNNNPTGVEVRRGSKEEAKKD TLPFWPYFVIKDLFALAVVLVVFFAIVGFMPNYLGHPDNYIEANPLVTPAHIVPEWYFLPFYAILRAFTADVWVVMLVNW LSFGIIDAKFFGVIAMFGAILVMALVPWLDTSRVRSGQYRPLFKWWFWLLAVDFVVLMWVGAMPAEGIYPYIALAGSAYW FAYFLIILPLLGIIEKPDAMPQTIEEDFNAHYGPETHPAE A1B4F3 Cytochrome c1 Paracoccus denitrificans PD1222 0.046904332 2 LEVO MTLRNASLTAVAALTVALAGGAVAQDASTAPGTTAPAGSSYHTNEAAPAAADTAPAAEAADEPAAEEAEAGEAEVTEEPA ATETPAEEPAADEPAATEEPDAEAEPAAEEAQATTEEAPAEEPAAEEPAAEEPAEEPAADAPAEEAAAEEAPAEPEAAAE EPAAEEPEATEEEAPAEEAAAEEAPAEEVVEDEAAADHGDAAAQEAGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQV YTEVCSACHGLRYVPLRTLADEGGPQLPEDQVRAYAANFDITDPETEEDRPRVPTDHFPTVSGEGMGPDLSLMAKARAGF HGPYGTGLSQLFNGIGGPEYIHAVLTGYDGEEKEEAGAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVA AFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTNKKLWQPIKHPRKPE A1B4F4 Ubiquinol-cytochrome c reductase iron-sulfur subunit Paracoccus denitrificans PD1222 0.020889236 2 LEVO MEIKPVSHADEHAGDHGATRRDFLYYATAGAGTVAAGAAAWTLVNQMNPSADVQALASIQVDVSGVETGTQLTVKWLGKP VFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVPIGDGAGDFGGWFCPCH GSHYDTSGRIRRGPAPQNLHIPVAEFLDDTTIKLG A1B4F2 7.1.1.8 Cytochrome c oxidase subunit 1 Paracoccus denitrificans PD1222 0.06248664499999999 2 LEVO MADAAVHGHGDHHDTRGFFTRWFMSTNHKDIGILYLFTAGIVGLISVCFTVYMRMELQHPGVQYMCLEGARLIADASAEC TPNGHLWNVMITYHGVLMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRLNNLSYWMYVCGVALGVASLLAPGGNDQMGS GVGWVLYPPLSTTEAGYSMDLAIFAVHVSGASSILGAINIITTFLNMRAPGMTLFKVPLFAWSVFITAWLILLSLPVLAG AITMLLMDRNFGTQFFDPAGGGDPVLYQHILWFFGHPEVYIIILPGFGIISHVISTFAKKPIFGYLPMVLAMAAIGILGF VVWAHHMYTAGMSLTQQAYFMLATMTIAVPTGIKVFSWIATMWGGSIEFKTPMLWAFGFLFLFTVGGVTGVVLSQAPLDR VYHDTYYVVAHFHYVMSLGAVFGIFAGVYYWIGKMSGRQYPEWAGQLHFWMMFIGSNLIFFPQHFLGRQGMPRRYIDYPV EFAYWNNISSIGAYISFASFLFFIGIVFYTLFAGKRVNVPNYWNEHADTLEWTLPSPPPEHTFETLPKREDWDRAHAH A1B3D7 7.1.1.9 Cytochrome c oxidase subunit 2 Paracoccus denitrificans PD1222 0.032563642999999996 2 LEVO MMAIATKRRGVAAVMSLGVATMTAVPALAQDVLGDLPVIGKPVNGGMNFQPASSPLAHDQQWLDHFVLYIITAVTIFVCL LLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSLPILFRSQEMPNDPDLVIKAIGHQWYWSYEYPNDG VAFDALMLEKEALADAGYSEDEYLLATDNPVVVPVGKKVLVQVTATDVIHAWTIPAFAVKQDAVPGRIAQLWFSVDQEGV YFGQCSELCGINHAYMPIVVKAVSQEKYEAWLAGAKEEFAADASDYLPASPVKLASAE A1BA41 7.1.1.9 cytochrome-c oxidase Paracoccus denitrificans PD1222 0.030833161999999997 2 LEVO MAHVKNHDYQILPPSIWPFFGAIGAFVMLTGAVAWMKGITFFGLPVEGPWMFLIGLVGVLYVMFGWWADVVNEGETGEHT PVVRIGLQYGFILFIMSEVMFFVAWFWAFIKNALYPMGPDSPIKDGVWPPEGIVTFDPWHLPLINTLILLLSGVAVTWAH HAFVHEGDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLADTVYAGAFYMATGFHGAHVIIGTIFLFVCLIRLLKGQM TQKQHVGFEAAAWYWHFVDVVWLFLFVVIYIWGR A1BA37 7.1.1.9 Aa3 type cytochrome c oxidase subunit IV Paracoccus denitrificans PD1222 0.007351497 2 LEVO MGYPCARRIASFTDRIMASHHEITDHKHGEMDIRHQQATFAGFIKGATWVSILSIAVLVFLALANS A1AZ52 Cytochrome c, class I Paracoccus denitrificans PD1222 0.018177405999999997 2 LEVO MFDTMTVTKAAGALIGSLLFLLLMSWAASGIFHVGTSGHGAEGEEHAQAYTIPVESAGGAEGEAVDEGPDFATVLASADP AAGEKVFGKCKACHKLDGNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLP KIEDRANLIAYLEGQQ A1B311 NADH:ubiquinone oxidoreductase 17.2 kD subunit Paracoccus denitrificans PD1222 0.014460885 1 LEVO (FME)SFLLRFLTWWNSQTLNTQVWTKLYGEKVGEDDQGNVYYQSGGGKRRWVIYNGESEASRISPEWHGWLHHTYKEPP TAAPLAHKPWEKPHEPNLTGSSGAYHPAGSLYRAQPVERRDYDAWQPE A1B1H8 Transmembrane helix of unknown identity Paracoccus denitrificans PD1222 0.002996685 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) Transmembrane helix of unknown identity Paracoccus denitrificans PD1222 0.0025711609999999998 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) cytochrome-c oxidase Paracoccus denitrificans PD1222 0.060042112999999994 1 LEVO MLDTIKLIALGTIAVLAAIAANYARPDDLAYLVNALIIMLAAGIMFLRVLRQMGNEQPALEPHPETQYMDDVVRAGVIAT AFWGVVGFLVGVVIAFQLAFPALNLSDITMGYTNFGKLRPLHTSAVIFAFGGNALIATSFYVVQRTSAARLWGGNAAWFV FWGYQLFIVLAATGYILGATQSKEYAEPEWYVDWWLTVVWVVYLAVFLGTILKRKEPHIYVANWFYLSFIVTIAMLHIVN NLAIPVSLFGSKSVQLFSGVQDAMTQWWYGHNAVGFFLTAGFLGMMYYFIPKQAERPVYSYKLSIIHFWALIFLYIWAGP HHLHYTALPDWASTLGMVFSIILWMPSWGGMINGLMTLSGAWDKLRTDPIIRMMVVAVGFYGMATFEGPMMSIKAVNSLS HYTDWTIGHVHSGALGWNGMITFGALYYLVPRLWGRERLYSTGLVSWHFWLATIGLVLYAASMWVSGIMEGLMWREVDAQ GFLVNAFADTVAAKFPMNVVRALGGVLYLGGALIMCYNLWATVAKQPKTQSTAAAVPAE A1B351 7.1.1.9 Cytochrome c oxidase, cbb3-type, subunit II Paracoccus denitrificans PD1222 0.027362098 1 LEVO MAILEKHKVLEKNATLLLVFSFLVVTIGGIVEIAPLFYLQNTIEKVQGMRPYTPLELKGRDIYVREGCYVCHSQMIRPMR DEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGRYSDEWHLDHLVDPQAVVPESIMPKYGFLLNRQVDASNMQQRL KTDALVGVPYDDAMIAAAVEDFRAQADPDADASGLEERYPGAQQRNFDRRPGVSEMDALIAYLQVLGTMVDFSTFEPDPN R A1B350 Cbb3-type cytochrome c oxidase subunit CcoP Paracoccus denitrificans PD1222 0.037597531000000003 1 LEVO MADTDDEHASPQNPDNRIELERQAADEAHKAKILAHPPEGPGGDPLHPPVTPRPGATRVVRDRKGGRRVVEVPSTGHSWD GIEEYDNPLPRWWLWTFYATIVWGVLYLIAYPAIPLVNGATQGLLGQNYRSDVAAEIQRFNEANAPIQAKLVETPLEEIA ADPELANYTANAGAAIFRTWCAQCHGSGAGGATGYPSLLDNDWLWGGTLEEIHTTVMHGIRDPKDADTRYSEMPRFGIDG LLENAQISQVVNHVLELGGLPHDAALAAEGVEVFADNCSSCHAEDGTGDRAQGAPDLTDAVWLYGSDPATITRIVRDGPF GVMPAWTGRLSEADIVAVAAYVHSLGGGE A1B348 IRON/SULFUR CLUSTER 0.00035163999999999996 6 SF4 SODIUM ION 2.299e-05 1 NA FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 4 FES FLAVIN MONONUCLEOTIDE 0.00045634399999999997 1 FMN 2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol 0.0005167519999999999 3 DU0 UBIQUINONE-10 0.0008633429999999999 5 U10 ZINC ION 6.5409e-05 1 ZN CARDIOLIPIN 0.0014640429999999997 1 CDL PROTOPORPHYRIN IX CONTAINING FE 0.000616487 6 HEM CALCIUM ION 4.0078e-05 6 CA HEME C 0.0006185030000000001 5 HEC HEME-A 0.000852837 4 HEA COPPER (II) ION 6.354599999999999e-05 3 CU MANGANESE (II) ION 5.4938e-05 1 MN DINUCLEAR COPPER ION 0.00012709199999999998 2 CUA singleParticle particle 2.5 7.5 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.9 2.7 GATAN K2 QUANTUM (4k x 4k) COUNTING 55.2 1 NONE 6.98 FSC 0.143 CUT-OFF 4238 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_51125_msk_1.map emd_51125_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 600 600 600 -113 -113 -113 600 600 600 642.00006 642.00006 642.00006 90.0 90.0 90.0 X Y Z -0.0837064 0.099842556 0.00013361474 0.010337483 1.07 1.07 1.07 AUTHOR ::::EMDATABANK.org::::EMD-51125:::: One of the 2 half maps obtained from the 3D refinement procedure. The pixel size (1.07) here is the nominal one. The box size of this half map, 600 pixels, is not trimmed. emd_51125_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 600 600 600 -113 -113 -113 600 600 600 642.00006 642.00006 642.00006 90.0 90.0 90.0 X Y Z -0.09142209 0.107947946 0.0001071971 0.010403991 1.07 1.07 1.07 AUTHOR ::::EMDATABANK.org::::EMD-51125:::: One of the 2 half maps obtained from the 3D refinement procedure. The pixel size (1.07) here is the nominal one. The box size of this half map, 600 pixels, is not trimmed.