<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_11_0/emdb.xsd" version="3.0.11.0" emdb_id="EMD-53356">
    <admin>
        <current_status>
            <date>2026-02-18</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <revision_history>
            <revision version="1.0" date="2026-02-18">
                <change_list>
                    <model>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </model>
                    <metadata>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </metadata>
                    <half_map part="1">
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </half_map>
                    <half_map part="2">
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </half_map>
                    <image>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </image>
                    <primary_map>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </primary_map>
                </change_list>
            </revision>
        </revision_history>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2025-04-09</deposition>
            <header_release>2026-02-18</header_release>
            <map_release>2026-02-18</map_release>
            <update>2026-02-18</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>European Research Council (ERC)</funding_body>
                <code>788974</code>
                <country>European Union</country>
            </grant_reference>
            <grant_reference>
                <funding_body>Agence Nationale de la Recherche (ANR)</funding_body>
                <code>ANR-23-CE11-0009-01</code>
                <country>France</country>
            </grant_reference>
        </grant_support>
        <title>Human alpha7 nicotinic receptor in complex with the E6 nanobody</title>
        <authors_list>
            <author>Barilone N</author>
            <author>Vangelatou M</author>
            <author>Marouf FZ</author>
            <author>Dejean de la Batie G</author>
            <author>Ayme G</author>
            <author>Lafaye P</author>
            <author>Corringer P-J</author>
            <author>Prevost MS</author>
        </authors_list>
        <keywords>Nicotinic receptor, Nanobody, MEMBRANE PROTEIN</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0003-0373-7262" order="1">Barilone N</author>
                    <author order="2">Vangelatou M</author>
                    <author ORCID="0009-0006-4294-1062" order="3">Marouf FZ</author>
                    <author order="4">Dejean de la Batie G</author>
                    <author order="5">Li Q</author>
                    <author ORCID="0000-0002-5761-1342" order="6">Lafaye P</author>
                    <author ORCID="0000-0002-0438-8095" order="7">Ayme G</author>
                    <author order="8">Corringer PJ</author>
                    <author ORCID="0000-0001-5621-3708" order="9">Prevost MS</author>
                    <title>Discovery and mechanism of negative allosteric modulation of the alpha 7 nicotinic acetylcholine receptor by nanobodies.</title>
                    <journal_abbreviation>Proc.Natl.Acad.Sci.USA</journal_abbreviation>
                    <country>US</country>
                    <volume>123</volume>
                    <first_page>e2514734123</first_page>
                    <last_page>e2514734123</last_page>
                    <year>2026</year>
                    <external_references type="PUBMED">41576092</external_references>
                    <external_references type="DOI">doi:10.1073/pnas.2514734123</external_references>
                    <external_references type="ISSN">1091-6490</external_references>
                    <external_references type="CSD">0040</external_references>
                    <external_references type="ASTM">PNASA6</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>9qto</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
        <other_db_list>
            <db_reference>
                <db_name>EMDB</db_name>
                <accession_id>EMD-53356</accession_id>
                <content_type>associated EM volume</content_type>
                <details>Human alpha7 nicotinic receptor in complex with the E6 nanobody</details>
            </db_reference>
        </other_db_list>
    </crossreferences>
    <sample>
        <name>Human nicotinic acetylcholine receptor alpha7 in complex with Nanobody E6</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Human nicotinic acetylcholine receptor alpha7 in complex with Nanobody E6</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.325</theoretical>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Neuronal acetylcholine receptor subunit alpha-7,CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.04283766</theoretical>
                </molecular_weight>
                <number_of_copies>5</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>EFQRKLYKELVKNYNPLERPVANDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFP
DGQIWKPDILLYNSADERFDATFHTNVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQMQ
EADISGYIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKIS
LGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFL
RMKRDGVAVCSEWKFAACVVDRLCLMAFSVFTIICTIGILMSAPNFVEAVSKDFA</string>
                    <external_references type="UNIPROTKB">P36544</external_references>
                    <external_references type="UNIPROTKB">A0A0A6YYA8</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>Nanobody E6</name>
                <natural_source database="NCBI">
                    <organism ncbi="30538">Vicugna pacos</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.017089727</theoretical>
                </molecular_weight>
                <number_of_copies>5</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>AQLQLVESGGGLVQPGGSLRLSCAASGFTLDYYTIGWFRQAPGKEREGVSCIRGSGGSTNYADSVKGRFTISRDNAKNTV
YLQMNSLKPEDTAVYYCAADFLSTCSLAGYRYEEVWGQGTLVTVSSAHHSEDPSAAAEQKLISEEDLNGAAHHHHHHGS</string>
                </sequence>
            </protein_or_peptide>
            <ligand macromolecule_id="6">
                <name>water</name>
                <molecular_weight>
                    <theoretical units="MDa">1.8015e-05</theoretical>
                </molecular_weight>
                <number_of_copies>292</number_of_copies>
                <formula>HOH</formula>
            </ligand>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.7</concentration>
                    <buffer>
                        <ph>7.8</ph>
                    </buffer>
                    <grid>
                        <model>UltrAuFoil R1.2/1.3</model>
                        <material>GOLD</material>
                        <mesh>300</mesh>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>TFS TITAN THEMIS</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>OTHER</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">0.7000000000000001</nominal_defocus_min>
                    <nominal_defocus_max units="µm">2.75</nominal_defocus_max>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K3 BIOQUANTUM (6k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">30.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <type>NONE</type>
                </ctf_correction>
                <startup_model type_of_model="NONE"/>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">2.16</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>445239</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="364501">
        <file>emd_53356.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>450</col>
            <row>450</row>
            <sec>450</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>450</x>
            <y>450</y>
            <z>450</z>
        </spacing>
        <cell>
            <a units="Å">290.25</a>
            <b units="Å">290.25</b>
            <c units="Å">290.25</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.19038609</minimum>
            <maximum>0.47082907</maximum>
            <average>0.00020871157</average>
            <std>0.012151429</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">0.645</x>
            <y units="Å">0.645</y>
            <z units="Å">0.645</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.08</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-53356::::</label>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            </modelling>
        </modelling_list>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="364501">
                <file>emd_53356_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>450</col>
                    <row>450</row>
                    <sec>450</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>450</x>
                    <y>450</y>
                    <z>450</z>
                </spacing>
                <cell>
                    <a units="Å">290.25</a>
                    <b units="Å">290.25</b>
                    <c units="Å">290.25</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.54320556</minimum>
                    <maximum>0.6117943</maximum>
                    <average>0.00030368555</average>
                    <std>0.062656365</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.645</x>
                    <y units="Å">0.645</y>
                    <z units="Å">0.645</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-53356::::</label>
            </half_map>
            <half_map format="CCP4" size_kbytes="364501">
                <file>emd_53356_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>450</col>
                    <row>450</row>
                    <sec>450</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>450</x>
                    <y>450</y>
                    <z>450</z>
                </spacing>
                <cell>
                    <a units="Å">290.25</a>
                    <b units="Å">290.25</b>
                    <c units="Å">290.25</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.49641082</minimum>
                    <maximum>0.5783553</maximum>
                    <average>0.0003057798</average>
                    <std>0.06251385</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.645</x>
                    <y units="Å">0.645</y>
                    <z units="Å">0.645</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-53356::::</label>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
