2025-10-29 REL PDBe INITIAL_RELEASE REPOSITORY PDBe PDBe 2025-04-11 2025-10-29 2025-10-29 2025-10-29 Other government IA/I/20/1/504905 Royal Society R179278 United Kingdom apPol-DNA-nucleotide complex (ternary 3) Lahiri I Kumari A DNA polymerase, REPLICATION Kumari A Enache T Craggs TD Pata JD Lahiri I Structural basis of multitasking by the apicoplast DNA polymerase from Plasmodium falciparum. Nucleic Acids Res. UK 53 2025 41099714 doi:10.1093/nar/gkaf1005 1362-4962 0389 NARHAD EMD-53335 other EM volume 9qv9 FULLOVERLAP EMDB EMD-53335 other EM volume EMDB EMD-53391 associated EM volume
apPol-DNA-nucleotide complex (ternary 3)
 Ternary complex of apicoplast DNA polymerase, DNA and dGTP with Ca2+ Ternary complex of apicoplast DNA polymerase, DNA and dGTP with Ca2+ 0 1 2 3 Plasmodium falciparum 0.095 Plastid replication-repair enzyme Plasmodium falciparum 0.076473484 1 Escherichia coli LEVO MGSSHHHHHHSQDPENLYFQGDEITKKYIKDNIINVDDNIIKKKDIFKLKNENNEITECAFEYFESKKKFDDDIESRFFI INDNNYNENINLIYKDIKYCGLNIQTTGLEVFDENIRLIQIAVENYPVIIYDMFNINKKDILDGLRKVLENKNIIKIIQN GKFDAKFLLHNNFKIENIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVILDKQQQNSVWNNSLLNNNQLFYAARDSSCL LKLYKKLKEEIKKENLHIVNDIENKCILPICDMELNGIKVDLENLQKSTNEILNELNIEKDNLKKKLKDENINVNSQQQV LKALQKNNVRDISNKLIENTSDSNLKNFLNHEEIISLRNYRRLYKLYSAFYLKLPLHINTKTNKIHTTFNQLKTFSGRFS SEKPNLQQIPRQKNIREIFIPNDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKNIPDINKEDR HIAKAINFGLIYGMNYVNLKNYANTYYGLNMSLDQCLYFYNSFFEHYKGIYKWHNQVKQKRALQYSTLSNRKVIFPYFSF TKALNYPVQGTCADILKLALVDLYDNLKDINGKIILCVHDEIIIEVNKKFQEEALKILVQSMENSASYFLKKVKCEVSVK IAENWGSKD A0A024WKD7 DNA primer strand DNA molecule 0.007714970999999999 1 (DC)(DA)(DG)(DG)(DT)(DG)(DT)(DC)(DA)(DG)(DT)(DC)(DA)(DG)(DC)(DT)(DA)(DG)(DT)(DG) (DC)(DT)(DG)(DA)(DC) DNA DNA template strand DNA molecule 0.01102308 1 (DG)(DC)(DT)(DA)(DC)(DC)(DG)(DT)(DA)(DG)(DC)(DG)(DT)(DC)(DA)(DG)(DC)(DA)(DC)(DT) (DA)(DG)(DC)(DT)(DG)(DA)(DC)(DT)(DG)(DA)(DC)(DA)(DC)(DC)(DT)(DG) DNA 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE 0.000507181 1 DGT CALCIUM ION 4.0078e-05 1 CA singleParticle particle 7.5 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 0.8 0.8 3.8000000000000003 3.8000000000000003 81000.0 81000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 77.0 77.0 20 GATAN K3 BIOCONTINUUM (6k x 4k) 11944 60.0 1 1993221 cryoSPARC PHASE FLIPPING AND AMPLITUDE CORRECTION 3.5 FSC 0.143 CUT-OFF cryoSPARC 92787 MAXIMUM LIKELIHOOD cryoSPARC 4.5.1 MAXIMUM LIKELIHOOD cryoSPARC 4.5.1 emd_53391.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 228 228 228 0 0 0 228 228 228 241.68 241.68 241.68 90.0 90.0 90.0 X Y Z -0.0016963042 2.042485 0.0010476987 0.024111142 1.06 1.06 1.06 0.095 AUTHOR DeepEMhancer sharpened map 5DKT PDB experimental model RIGID BODY FIT emd_53391_msk_1.map emd_53391_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 228 228 228 0 0 0 228 228 228 241.68 241.68 241.68 90.0 90.0 90.0 X Y Z -0.65648955 0.94212675 0.00010088911 0.016212676 1.06 1.06 1.06 AUTHOR B factor sharpened map emd_53391_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 228 228 228 0 0 0 228 228 228 241.68 241.68 241.68 90.0 90.0 90.0 X Y Z -0.08913249 0.26574293 0.00025151938 0.008348813 1.06 1.06 1.06 AUTHOR emd_53391_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 228 228 228 0 0 0 228 228 228 241.68 241.68 241.68 90.0 90.0 90.0 X Y Z -0.08883128 0.2634796 0.00025434737 0.008356733 1.06 1.06 1.06 AUTHOR