2026-04-08 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBe PDBe 2025-07-15 2026-02-25 2026-02-25 2026-04-08 German Research Foundation (DFG) 1286 Germany In situ cryo-electron tomogram of rat hippocampal synapse Petrovic A Do TT Siegert A Fernandez-Busandiego R synapse, synaptic vesicle, MEMBRANE PROTEIN Do TT Siegert A Domart F Hahn F Zeising C Muth S Pape C Kusch K Dresbach T Rizzoli SO Petrovic A Fernandez-Busnadiego R A correlative workflow for synaptic imaging by cryo-electron tomography. Structure UK 2026 41881019 doi:10.1016/j.str.2026.02.017 0969-2126 2005 STRUE6 EMD-54384 other EM volume EMDB EMD-54384 other EM volume EMDB EMD-54398 associated EM volume primary hippocampal neurons primary hippocampal neurons 0
synapse
Rattus norvegicus tomography cell 7.2 Quantifoil R2/2 GOLD 200 SILICON DIOXIDE HOLEY ETHANE-PROPANE HOMEMADE PLUNGER
FIB-milled lamella of rat primary hippocampal neurons
5% glycerol OTHER OTHER 30 0.05 3600 83 5000 150
The value given for _em_focused_ion_beam.instrument is Aquilos 2. This is not in a list of allowed values {'OTHER', 'DB235'} so OTHER is written into the XML file.
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 3.0 3.0 5.0 5.0 64000.0 64000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN TFS Selectris 20 FEI FALCON IV (4k x 4k) 4096 4096 3.24 1 IMOD 4.12 37 NONE emd_54398.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 1024 1024 500 0 0 0 1024 1024 500 7741.44 7741.44 3780.0 90.0 90.0 90.0 X Y Z -187.674029999999988 84.470470000000006 1.0111912 9.7181015 7.56 7.56 7.56 AUTHOR synaptic tomogram from rat primary neurons