2025-08-13 REL PDBc INITIAL_RELEASE REPOSITORY PDBj PDBc 2024-05-15 2025-08-13 2025-08-13 2025-08-13 National Natural Science Foundation of China (NSFC) 32301018 China Xu K Zhang Y Yin Y Xue W Han Y Tian Y Nucleosome, histone, DNA, STRUCTURAL PROTEIN/DNA, STRUCTURAL PROTEIN-DNA complex Xue W Han Y Tian Y Wang J Xie Z Zheng X Yue X Dong S Li H Luo Z Zhang S Yang Y Zou Z Li W Ma N Zhu F Chen C Yin Y Zhang Y Xu K Nucleic Acids Res. UK 53 2025 40744500 doi:10.1093/nar/gkaf734 1362-4962 0389 NARHAD 8zjr FULLOVERLAP EMDB EMD-60154 associated EM volume

Structure of nucleosome-bound RFX5 complex

free nucleosome free nucleosome 0 1 2 3 4 Homo sapiens Histone H3.2 Homo sapiens 0.015543202999999998 2 Escherichia coli BL21(DE3) LEVO GPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQD FKTDLRFQSSAVMALQEASEAYLVGLFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA Q71DI3 Histone H4 Homo sapiens 0.011824946 2 Escherichia coli BL21(DE3) LEVO MADLMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH AKRKTVTAMDVVYALKRQGRTLYGFGG P62805 Histone H2A type 1-B/E Homo sapiens 0.014319716 2 Escherichia coli BL21(DE3) LEVO GPMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR IIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK P04908 Histone H2B type 1-K Homo sapiens 0.014351734 2 Escherichia coli BL21(DE3) LEVO MADLMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAG EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK O60814 DNA (147-MER) synthetic construct 0.045664108999999994 1 (DA)(DT)(DC)(DC)(DA)(DC)(DA)(DC)(DG)(DT)(DT)(DA)(DC)(DA)(DC)(DG)(DA)(DC)(DG)(DC) (DT)(DC)(DT)(DT)(DC)(DC)(DG)(DA)(DT)(DC)(DT)(DT)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG) (DT)(DG)(DC)(DA)(DA)(DG)(DC)(DA)(DT)(DG)(DA)(DT)(DC)(DC)(DC)(DT)(DT)(DC)(DG)(DA) (DT)(DG)(DA)(DA)(DT)(DA)(DG)(DA)(DG)(DC)(DC)(DG)(DA)(DC)(DT)(DG)(DG)(DG)(DC)(DA) (DT)(DA)(DG)(DT)(DA)(DA)(DC)(DG)(DC)(DG)(DT)(DG)(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG) (DA)(DG)(DG)(DT)(DG)(DG)(DT)(DT)(DC)(DA)(DC)(DG)(DG)(DT)(DC)(DA)(DT)(DG)(DC)(DC) (DG)(DC)(DT)(DT)(DG)(DG)(DG)(DT)(DA)(DA)(DG)(DC)(DA)(DG)(DA)(DT)(DC)(DG)(DG)(DA) (DA)(DG)(DA)(DG)(DG)(DA)(DT) DNA DNA (147-MER) synthetic construct 0.04508176999999999 1 (DA)(DT)(DC)(DC)(DT)(DC)(DT)(DT)(DC)(DC)(DG)(DA)(DT)(DC)(DT)(DG)(DC)(DT)(DT)(DA) (DC)(DC)(DC)(DA)(DA)(DG)(DC)(DG)(DG)(DC)(DA)(DT)(DG)(DA)(DC)(DC)(DG)(DT)(DG)(DA) (DA)(DC)(DC)(DA)(DC)(DC)(DT)(DC)(DA)(DC)(DC)(DA)(DA)(DC)(DC)(DC)(DA)(DC)(DG)(DC) (DG)(DT)(DT)(DA)(DC)(DT)(DA)(DT)(DG)(DC)(DC)(DC)(DA)(DG)(DT)(DC)(DG)(DG)(DC)(DT) (DC)(DT)(DA)(DT)(DT)(DC)(DA)(DT)(DC)(DG)(DA)(DA)(DG)(DG)(DG)(DA)(DT)(DC)(DA)(DT) (DG)(DC)(DT)(DT)(DG)(DC)(DA)(DC)(DC)(DC)(DT)(DA)(DA)(DC)(DC)(DA)(DA)(DG)(DA)(DT) (DC)(DG)(DG)(DA)(DA)(DG)(DA)(DG)(DC)(DG)(DT)(DC)(DG)(DT)(DG)(DT)(DA)(DA)(DC)(DG) (DT)(DG)(DT)(DG)(DG)(DA)(DT) DNA DNA-binding protein RFX5 Homo sapiens 0.016992186 1 Escherichia coli BL21(DE3) LEVO MGSSHHHHHENLYFQGSDNDKLYLYLQLPSGPTTGDKSSEPSTLSNEEYMYAYRWIRNHLEEHTDTCLPKQSVYDAYRKY CESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDLKGSESPEM P48382 singleParticle particle 8.0 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.4000000000000001 2.4 GATAN K3 (6k x 4k) 49.41 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 6PWE 3.3 FSC 0.143 CUT-OFF 167866 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_60154_msk_1.map emd_60154_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 316.49997 316.49997 316.49997 90.0 90.0 90.0 X Y Z -0.6461188 1.6334897 0.0015764334 0.059921384 1.055 1.055 1.055 AUTHOR ::::EMDATABANK.org::::EMD-60154:::: emd_60154_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 316.49997 316.49997 316.49997 90.0 90.0 90.0 X Y Z -0.5914269 1.5978614 0.0015866825 0.059939124 1.055 1.055 1.055 AUTHOR ::::EMDATABANK.org::::EMD-60154::::