2025-11-19 REL PDBj PDBj PDBj 2024-08-21 2025-11-19 2025-11-19 2025-11-19 Japan Society for the Promotion of Science (JSPS) JP22K18034 Japan Japan Society for the Promotion of Science (JSPS) JP22K06098 Japan Japan Society for the Promotion of Science (JSPS) JP18H05534 Japan Japan Society for the Promotion of Science (JSPS) JP20H00449 Japan Japan Society for the Promotion of Science (JSPS) JP23H05475 Japan Japan Society for the Promotion of Science (JSPS) JP24H02328 Japan Japan Society for the Promotion of Science (JSPS) JP24H02319 Japan Japan Science and Technology JPMJPR2288 Japan Japan Science and Technology JPMJER1901 Japan Japan Agency for Medical Research and Development (AMED) JP24ama121002 Japan Japan Agency for Medical Research and Development (AMED) JP24ama121009 Japan Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-6 Matsumoto S Takizawa Y Ogasawara M Hashimoto K Negishi L Xu W Tachibana H Yamamoto J Iwai S Sugasawa K Kurumizaka H DNA repair, Nucleosome, UV-DDB, DNA damage, DDB2, NER, DNA BINDING PROTEIN Matsumoto S Takizawa Y Ogasawara M Hashimoto K Negishi L Xu W Tachibana H Yamamoto J Iwai S Sugasawa K Kurumizaka H Structural basis of cyclobutane pyrimidine dimer recognition by UV-DDB in the nucleosome. Nat Commun UK 16 9709 9709 2025 41219227 doi:10.1038/s41467-025-65486-5 2041-1723 EMD-61243 consensus EM volume EMDB EMD-61243 consensus EM volume EMDB EMD-61248 associated EM volume PDB 9J8W unspecified Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-6 Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-6 0 1 2 3 4 5 6 7 Homo sapiens singleParticle particle 7.4 ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 10.0 20.0 GATAN K3 BIOQUANTUM (6k x 4k) 1.46 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 3.85 FSC 0.143 CUT-OFF 21011 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD 6 emd_61248.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.011119962 0.028063621 0.00005102282 0.000695152 1.06 1.06 1.06 0.004 AUTHOR emd_61248_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.018531274 0.042875186 0.00003908471 0.0021593862 1.06 1.06 1.06 AUTHOR emd_61248_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.020367747 0.044767346 0.000039941526 0.0021544492 1.06 1.06 1.06 AUTHOR