2025-04-30 REL PDBc INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation em_admin _citation.journal_volume _citation.title _em_admin.last_update PDBj PDBc 2025-02-13 2025-04-16 2025-04-16 2025-04-30 Shenzhen Science and Technology Program JCYJ20240813180500001 China Shenzhen Science and Technology Program ZDSYS20230626091203007 China Bacteriophage Mycofy1 distal head-to-tail interface (C6 symmetry) Li X Shao Q Li L Xie L Ruan Z Fang Q Mycobacterium, bacteriophage, prolate head, head-to-tail interface, connector protein, terminator protein, tail tube protein, VIRUS, VIRAL PROTEIN Li X Shao Q Li L Xie L Ruan Z Fang Q Cryo-EM Reveals Structural Diversity in Prolate-headed Mycobacteriophage Mycofy1. J.Mol.Biol. UK 437 169126 169126 2025 40187685 doi:10.1016/j.jmb.2025.169126 1089-8638 0070 JMOBAK 9lwa FULLOVERLAP Mycolicibacterium phage Mycofy1 Mycolicibacterium phage Mycofy1 0 1 2 3 Mycolicibacterium phage Mycofy1 Mycolicibacterium smegmatis MC2 155 VIRION STRAIN false false Head-to-tail stopper Mycolicibacterium phage Mycofy1 0.013696388
Sequence reference for Mycolicibacterium phage Mycofy1 is not available at the time of biocuration. Current sequence reference is from UniProt id Q854Y9.
1 LEVO MSEEFGGQVVALVSVAETGVPGWGGLKAKARTTTRQPGVHFRPASSTETPDGQTNVATEVWKLTAPPTAAVLAAKPGGEL VYDGTEHPESLDLDSAAGRAATFRVDGPIMPKYDLAGQVHHVTIMCKRQAG Q854Y9 Terminator protein gp11 Mycolicibacterium phage Mycofy1 0.015704601 1 LEVO MTMADLHDQDAPDEEDFVVCWMQPVMRTAVERDIDAELPFCEVTRIDGADDPEAGTDDPVIQLDFYALGAEAAKAAAKQG HRRMLFLFRNFPTVTLSDGTLADLDFGETLIKPSRMAFEHDQIVRYTARYQLGTSYVAVP Major tail protein Mycolicibacterium phage Mycofy1 0.029029006
Sequence reference for Mycolicibacterium phage Mycofy1 is not available at the time of biocuration. Current sequence reference is from UniProt id A0A0A7RVP8.
1 LEVO MTQPLTGTTPAAGGYTTVDNRLQGGHRTGLIAVAFRDALGTSTNISPHNANGSVRWSPLAQDGQLRDDLFAHRLENGVWV ENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSNWPFESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNP LVELPGEADGFSQPVDAEKIGRQFLLYGIRKKEGRYLYEVDAYDLAYLNNKGERKFGKRGTAAELTFKPEPSGYFMAMVD GEYKPIIKHTFIGGPAWDALAGDGS A0A0A7RVP8 singleParticle particle 7.5 Quantifoil R2/1 COPPER CARBON CONTINUOUS GLOW DISCHARGE ETHANE 100 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 1.0 3.0 59000.0 FEI TITAN KRIOS AUTOGRID HOLDER EPU FEI FALCON IV (4k x 4k) 5.09 25.7 1 22074
Manual picking
 3.83 FSC 0.143 CUT-OFF RELION 4.0 12594 MAXIMUM LIKELIHOOD RELION 4.0 MAXIMUM LIKELIHOOD RELION 4.0 emd_63436.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 240 240 240 0 0 0 240 240 240 329.28 329.28 329.28 90.0 90.0 90.0 X Y Z -0.019720891 0.04609217 -0.00012793034 0.0025628854 1.372 1.372 1.372 0.011 AUTHOR emd_63436_msk_1.map emd_63436_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 240 240 240 0 0 0 240 240 240 329.28 329.28 329.28 90.0 90.0 90.0 X Y Z -0.020363685 0.047882482 -0.000116559735 0.0026648503 1.372 1.372 1.372 AUTHOR emd_63436_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 240 240 240 0 0 0 240 240 240 329.28 329.28 329.28 90.0 90.0 90.0 X Y Z -0.01743912 0.042511348 -0.00013930096 0.0026787387 1.372 1.372 1.372 AUTHOR