<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_11_0/emdb.xsd" version="3.0.11.0" emdb_id="EMD-65826">
    <admin>
        <current_status>
            <date>2026-02-04</date>
            <code>REL</code>
            <processing_site>PDBc</processing_site>
        </current_status>
        <revision_history>
            <revision version="1.0" date="2026-02-04">
                <change_list>
                    <model>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </model>
                    <metadata>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </metadata>
                    <fsc>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </fsc>
                    <half_map part="1">
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </half_map>
                    <half_map part="2">
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </half_map>
                    <image>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </image>
                    <primary_map>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </primary_map>
                </change_list>
            </revision>
        </revision_history>
        <sites>
            <deposition>PDBj</deposition>
            <last_processing>PDBc</last_processing>
        </sites>
        <key_dates>
            <deposition>2025-08-12</deposition>
            <header_release>2026-02-04</header_release>
            <map_release>2026-02-04</map_release>
            <update>2026-02-04</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Natural Science Foundation of China (NSFC)</funding_body>
                <country>China</country>
            </grant_reference>
        </grant_support>
        <title>Structure of Type II Abeta fibrils from AppNL-FPsen1P117L mice</title>
        <authors_list>
            <author>Cao Q</author>
            <author>Song M</author>
        </authors_list>
        <keywords>Abeta, amyloid, cryo-EM, PROTEIN FIBRIL</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="false">
                    <author order="1">Cao Q</author>
                    <author order="2">Zhang D</author>
                    <author order="3">Song M</author>
                    <author order="4">Zheng H</author>
                    <author order="5">Han J</author>
                    <author order="6">Xu K</author>
                    <title>Abeta fibrils from brains of 5xFAD and AppNL-FPsen1P117L mice adopt human Type II fibril fold as revealed by cryo-EM</title>
                    <journal_abbreviation>To Be Published</journal_abbreviation>
                    <external_references type="CSD">0353</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>9wap</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
        <other_db_list>
            <db_reference>
                <db_name>EMDB</db_name>
                <accession_id>EMD-65826</accession_id>
                <content_type>associated EM volume</content_type>
                <details>Structure of Type II Abeta fibrils from AppNL-FPsen1P117L mice</details>
            </db_reference>
        </other_db_list>
    </crossreferences>
    <sample>
        <name>Type II Amyloid-beta fibrils from AppNL-FPsen1P117L mice</name>
        <supramolecule_list>
            <tissue_supramolecule supramolecule_id="1">
                <name>Type II Amyloid-beta fibrils from AppNL-FPsen1P117L mice</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="10090">Mus musculus</organism>
                </natural_source>
            </tissue_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Amyloid-beta protein 42</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.004520087</theoretical>
                </molecular_weight>
                <number_of_copies>12</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="10090">Mus musculus</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA</string>
                    <external_references type="UNIPROTKB">P05067</external_references>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>TFS KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">0.8</nominal_defocus_min>
                    <nominal_defocus_max units="µm">3.5</nominal_defocus_max>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON IV (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">40.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="Å">4.76</delta_z>
                            <delta_phi units="deg">-3.2</delta_phi>
                            <axial_symmetry>C2</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">3.22</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>4.0</version>
                        </software>
                    </software_list>
                    <number_images_used>35234</number_images_used>
                </final_reconstruction>
                <ctf_correction>
                    <type>NONE</type>
                </ctf_correction>
                <segment_selection>
                    <number_selected>1608927</number_selected>
                    <software_list>
                        <software>
                            <name>Topaz</name>
                            <version>v0.2.5</version>
                        </software>
                    </software_list>
                </segment_selection>
                <startup_model type_of_model="OTHER"/>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </final_angle_assignment>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="13501">
        <file>emd_65826.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>150</col>
            <row>150</row>
            <sec>150</sec>
        </dimensions>
        <origin>
            <col>-75</col>
            <row>-75</row>
            <sec>-75</sec>
        </origin>
        <spacing>
            <x>150</x>
            <y>150</y>
            <z>150</z>
        </spacing>
        <cell>
            <a units="Å">139.8</a>
            <b units="Å">139.8</b>
            <c units="Å">139.8</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>Z</fast>
            <medium>Y</medium>
            <slow>X</slow>
        </axis_order>
        <statistics>
            <minimum>-6.7803917</minimum>
            <maximum>11.849430999999999</maximum>
            <average>0.000000000003298</average>
            <std>1.0</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">0.93200004</x>
            <y units="Å">0.93200004</y>
            <z units="Å">0.93200004</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>3.0</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-65826::::</label>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>AB INITIO MODEL</refinement_protocol>
            </modelling>
        </modelling_list>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="13501">
                <file>emd_65826_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>150</col>
                    <row>150</row>
                    <sec>150</sec>
                </dimensions>
                <origin>
                    <col>-75</col>
                    <row>-75</row>
                    <sec>-75</sec>
                </origin>
                <spacing>
                    <x>150</x>
                    <y>150</y>
                    <z>150</z>
                </spacing>
                <cell>
                    <a units="Å">139.8</a>
                    <b units="Å">139.8</b>
                    <c units="Å">139.8</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>Z</fast>
                    <medium>Y</medium>
                    <slow>X</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.013086886</minimum>
                    <maximum>0.024421863</maximum>
                    <average>0.00059660524</average>
                    <std>0.0025007024</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.93200004</x>
                    <y units="Å">0.93200004</y>
                    <z units="Å">0.93200004</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-65826::::</label>
            </half_map>
            <half_map format="CCP4" size_kbytes="13501">
                <file>emd_65826_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>150</col>
                    <row>150</row>
                    <sec>150</sec>
                </dimensions>
                <origin>
                    <col>-75</col>
                    <row>-75</row>
                    <sec>-75</sec>
                </origin>
                <spacing>
                    <x>150</x>
                    <y>150</y>
                    <z>150</z>
                </spacing>
                <cell>
                    <a units="Å">139.8</a>
                    <b units="Å">139.8</b>
                    <c units="Å">139.8</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>Z</fast>
                    <medium>Y</medium>
                    <slow>X</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.011441546</minimum>
                    <maximum>0.023469992</maximum>
                    <average>0.0006067066</average>
                    <std>0.0024920334</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.93200004</x>
                    <y units="Å">0.93200004</y>
                    <z units="Å">0.93200004</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-65826::::</label>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
