2026-03-11 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY RCSB RCSB 2025-05-27 2026-03-11 2026-03-11 2026-03-11 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM144981 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) S10OD025009 United States D3 prohead 1 Belford AK Huet A Maurer JB Duda RL Conway JF Icosahedral symmetry, bacteriophage, procapsid, capsid, HK97 fold, VIRUS LIKE PARTICLE Belford AK Maurer JB Duda RL Huet A Conway JF Structural insights into scaffold-guided assembly of the Pseudomonas phage D3 capsid. Nat Commun UK 16 11586 11586 2025 41274907 doi:10.1038/s41467-025-66648-1 2041-1723 EMD-70800 other EM volume 9oth FULLOVERLAP EMDB EMD-70800 other EM volume EMDB EMD-70832 associated EM volume
D3 prohead 1
 PDB 9OSB unspecified Pseudomonas phage D3 Pseudomonas phage D3 0 1 Pseudomonas phage D3 Pseudomonas aeruginosa 20 Prohead 2 590.0 9 VIRUS-LIKE PARTICLE OTHER false true Major capsid protein Pseudomonas phage D3 0.042871926 9 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO MSDFEKQIGELNASLKQVGDQIKSQAEQVNTQIANFGEMNKETRAKVDELLTAQGELQARLSAAEQAMLANEKRDGGEEA PKTAGQMVAESLKEQGVTSSLRGSHRVSMPRSAITSIDGSGGALVAPDRRPGVVAAPQRRLTIRDLVAPGTTESNSVEYV RETGFVNNAAPVSEGTQKPYSDLTFELENAPVRTIAHLFKASRQILDDASALQSYIDARARYGLMLVEEGQLLYGNGTGA NLHGIIPQAQAYAPPSGVVVTAEQRIDRIRLAILQAQLAEFPASGIVLNPIDWALIELTKDAENRYIIGSPQNGTTPTLW RLPVVETQAITQDEFLTGAFSLGAQIFDRMDIEVLVSTENDKDFENNMVTIRAEERLAFAVYRPEAFVTGSLTAS Q9XJT3 singleParticle particle 30 6.0 50.0 TRIS 50.0 Bis TRIS 100.0 Potassium glutamate Quantifoil R2/1 COPPER 400 CARBON HOLEY GLOW DISCHARGE ETHANE-PROPANE 100 298 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.5 5.0 75000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) COUNTING 1 2972 60.0 1 CTFFIND PHASE FLIPPING AND AMPLITUDE CORRECTION I 3.5 FSC 0.143 CUT-OFF RELION 4 20938 MAXIMUM LIKELIHOOD RELION 4 MAXIMUM LIKELIHOOD RELION 4 emd_70832.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 -256 -256 -256 512 512 512 688.64 688.64 688.64 90.0 90.0 90.0 X Y Z -0.008034363 0.04064559 -0.000000029071279 0.0045081642 1.345 1.345 1.345 0.015 AUTHOR D3 prohead 2, Icos symmetry 8fqk PDB experimental model FLEXIBLE FIT REAL emd_70832_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 -256 -256 -256 512 512 512 688.64 688.64 688.64 90.0 90.0 90.0 X Y Z -0.010067847 0.04130772 0.0000005735848 0.0045510926 1.345 1.345 1.345 AUTHOR emd_70832_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 -256 -256 -256 512 512 512 688.64 688.64 688.64 90.0 90.0 90.0 X Y Z -0.009270541 0.041569173 -0.00000063172735 0.0045450674 1.345 1.345 1.345 AUTHOR